miRBase entry: hco-mir-72

Stem-loop hco-mir-72


Accession
MI0020167
Description
Haemonchus contortus hco-mir-72 precursor miRNA
Gene family
MIPF0000277; mir-72

Literature search
1 open access papers mention hco-mir-72
(2 sentences)

Sequence

guguugagcaAGGCAAGAUGUUGGCAUAGCUGAacugcaguuucucagcuaugcuacaugaggccacgcacggcaucagcaccucuuucuuucccuacugauc
(((((((((..(((...((((.(((((((((((...........)))))))))))))))...))).......)).))))))).....................

Structure
---------------------       -  -----aA   AAG    U           acug 
                     guguuga gc       GGC   AUGU GGCAUAGCUGA    c
                     ||||||| ||       |||   |||| |||||||||||    a
                     cacgacu cg       ccg   uaca ucguaucgacu    g
cuagucaucccuuucuuucuc       a  gcacgca   gag    -           cuuu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-72

Accession MIMAT0023498
Description Haemonchus contortus hco-miR-72 mature miRNA
Sequence 11 - AGGCAAGAUGUUGGCAUAGCUGA - 33
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4