miRBase entry: hco-mir-5989

Stem-loop hco-mir-5989


Accession
MI0020174
Description
Haemonchus contortus hco-mir-5989 precursor miRNA


Sequence

gcuccacuauGUAGUCACCUGGGCGAACAGACAugaugauucggucauguuuguccagggcacuaucccaguucugugacagaaucaugguuuucuaaguaau
..........(((((..(((((((((((((((.(((....)))))).))))))))))))..))))).(((((((((...))))))..))).............

Structure
---------------------------gcuccacuau     CA            -   A   u 
                                     GUAGU  CCUGGGCGAACA GAC uga g
                                     |||||  |||||||||||| ||| |||  
                                     uauca  ggaccuguuugu cug gcu a
uaaugaaucuuuugguacuaagacagugucuugaccc     cg            a   -   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hco-miR-5989

Accession MIMAT0023505
Description Haemonchus contortus hco-miR-5989 mature miRNA
Sequence 11 - GUAGUCACCUGGGCGAACAGACA - 33
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4