miRBase entry: spu-mir-92d

Stem-loop spu-mir-92d


Accession
MI0020183
Description
Strongylocentrotus purpuratus spu-mir-92d precursor miRNA

Literature search
1 open access papers mention spu-mir-92d
(2 sentences)

Sequence

gucgaggcuaguguaauucugugacagcuuugcagcaagUAUUGCACUUACCCCGGCUG
((((.((..((((((((.((((..((....))..)).)).))))))))..)).))))..

Structure
--    a  cu        u  -  ga  g 
  gucg gg  aguguaau cu gu  ca c
  |||| ||  |||||||| || ||  ||  
  CGGC CC  UCACGUUA ga cg  gu u
GU    C  AU        U  a  ac  u 


Annotation confidence Not enough data
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Genome context
AAGJ05134155.1: 22230-22288 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from spu-mir-92d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature spu-miR-92d

Accession MIMAT0023512
Description Strongylocentrotus purpuratus spu-miR-92d mature miRNA
Sequence 40 - UAUUGCACUUACCCCGGCUG - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216218
    RNA deep sequencing reveals differential microRNA expression during development of sea urchin and sea star
    Kadri S, Hinman VF, Benos PV
    PLoS One (2011) 6:e29217