miRBase entry: spu-mir-5994

Stem-loop spu-mir-5994


Accession
MI0020187
Description
Strongylocentrotus purpuratus spu-mir-5994 precursor miRNA


Sequence

UGGAACCGAUAAUGGAUCAGGccucgaucaguccuguugucuaugcgaugaugaagcguuggaucggugaucugguccaaaauauagauagguccagg
((((.((.....((((((((((.((((((...(((.(((((........))))))).)...)))))).).)))))))))...........))))))..

Structure
--    A  ------GAUAA         - c      agu -  g     uau 
  UGGA CC           UGGAUCAGG c ucgauc   c cu uuguc   g
  |||| ||           ||||||||| | ||||||   | || |||||    
  accu gg           accuggucu g ggcuag   g ga aguag   c
gg    -  auagauauaaa         a u      guu c  -     uag 


Annotation confidence Not enough data
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Genome context
KN913685.1: 85863-85960 [+]

Database links

Mature spu-miR-5994

Accession MIMAT0023516
Description Strongylocentrotus purpuratus spu-miR-5994 mature miRNA
Sequence 1 - UGGAACCGAUAAUGGAUCAGG - 21
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22216218
    RNA deep sequencing reveals differential microRNA expression during development of sea urchin and sea star
    Kadri S, Hinman VF, Benos PV
    PLoS One (2011) 6:e29217