Stem-loop ath-MIR5995b

Accession

MI0020189

Description

Arabidopsis thaliana ath-MIR5995b precursor miRNA

Gene family

MIPF0001590; MIR5595

Sequence

aaacuguuuauauguaccugccaucuucaagagauaaugauagauuucuugaggcuuuugauaacauggACAUAUGAUCUGCAUCUUUGCauuuucaagugcaaagaugcagaucauauguccauguuaauaucaaagccu
..........................(((((((((........)))))))))((((((.((((((((((((((((((((((((((((((((((....))))))))))))))))))))))))))))))...)))))))))).

Structure

aaacuguuuauauguaccugccaucuucaagagauaaugauagauuucuuga      u    ---                              u 
                                                    ggcuuu gaua   acauggACAUAUGAUCUGCAUCUUUGCauu u
                                                    |||||| ||||   ||||||||||||||||||||||||||||||  
                                                    ccgaaa cuau   uguaccuguauacuagacguagaaacguga c
---------------------------------------------------u      -    aau                              a 

Annotation confidence Not enough data

Genome context

chr2: 10026910-10027050 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ath-MIR5995b

Mature ath-miR5995b

• Accession: MIMAT0023518
• Description: Arabidopsis thaliana ath-miR5995b mature miRNA
• Sequence: 70 - ACAUAUGAUCUGCAUCUUUGC - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22221297
   Global analysis of non-coding small RNAs in Arabidopsis in response to jasmonate treatment by deep sequencing technology
   "Zhang B, Xie D, Jin Z"
   "J Integr Plant Biol (2012) 54:73-86