Stem-loop ath-MIR4245

Accession

MI0020194

Description

Arabidopsis thaliana ath-MIR4245 precursor miRNA

Gene family

MIPF0001495; MIR4245

Sequence

gaauugucaguauaaaucuuugaucugauacucuauuaguuaguaugugaauuucuuuuuaacaauuuucuuauucaugcgagagcuaucaauaaguauuagaACAAAGUUUUAUACUGACAAUucaaucuuaccugauuuucaaaa
((((((((((((((((.(((((.(((((((((....(((((.....((((((....................)))))).....)))))......))))))))).))))).))))))))))))))))((((......)))).......

Structure

---------------------                u     a         --cuau     aguau      uucuuuuua 
                     gaauugucaguauaaa cuuug ucugauacu      uaguu     gugaau         a
                     |||||||||||||||| ||||| |||||||||      |||||     ||||||          
                     cuUAACAGUCAUAUUU GAAAC agauuauga      aucga     uacuua         c
aaaacuuuuaguccauucuaa                U     A         auaacu     gagcg      uucuuuuaa 

Annotation confidence Not enough data

Genome context

chr5: 21161506-21161652 [+]

Mature ath-miR4245

• Accession: MIMAT0023523
• Description: Arabidopsis thaliana ath-miR4245 mature miRNA
• Sequence: 104 - ACAAAGUUUUAUACUGACAAU - 124
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22221297
   Global analysis of non-coding small RNAs in Arabidopsis in response to jasmonate treatment by deep sequencing technology
   "Zhang B, Xie D, Jin Z"
   "J Integr Plant Biol (2012) 54:73-86