miRBase entry: ath-MIR5999

Stem-loop ath-MIR5999


Accession
MI0020196
Description
Arabidopsis thaliana ath-MIR5999 precursor miRNA


Sequence

aauagagguucaauuuaauuUCUUCACUAUUAGACGGACAAagugaauauauaaauauaucuugauguacauaucauuuuugugacauuauugauauguacaugaagauauauuuauauauucaauugguccgacuugguccgucuaauagugaggaaauuaaaucaaaucucugcuuugaauuuugacuu
..((((((((..(((((((((((((((((((((((((((.(((((((((((((((((((((((.((((((((((((.(..((...))..).)))))))))))).)))))))))))))))))))..........)))).)))))))))))))))))))))))))))..))))))))................

Structure
--------------aa        ca                           A    ----------                   g            u uu  u 
                uagagguu  auuuaauuUCUUCACUAUUAGACGGAC Aagu          gaauauauaaauauaucuu auguacauauca u  ug  
                ||||||||  ||||||||||||||||||||||||||| ||||          ||||||||||||||||||| |||||||||||| |  || g
                gucucuaa  uaaauuaaaggagugauaaucugccug uuca          cuuauauauuuauauagaa uacauguauagu a  ac  
uucaguuuuaaguuuc        ac                           g    gccugguuaa                   g            u uu  a 


Annotation confidence Not enough data
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Genome context
chr1: 7400802-7400992 [-]

Database links

Mature ath-miR5999

Accession MIMAT0023525
Description Arabidopsis thaliana ath-miR5999 mature miRNA
Sequence 21 - UCUUCACUAUUAGACGGACAA - 41
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22221297
    Global analysis of non-coding small RNAs in Arabidopsis in response to jasmonate treatment by deep sequencing technology
    "Zhang B, Xie D, Jin Z"
    "J Integr Plant Biol (2012) 54:73-86