Stem-loop dpr-MIR172b

Accession

MI0020206

Description

Digitalis purpurea dpr-MIR172b precursor miRNA

Gene family

MIPF0000035; MIR172

Literature search

1 open access papers mention dpr-MIR172b
(4 sentences)

Sequence

ucuggcguggcaucaucaagauucacaugaagcuaauucugaagaugaucaugAGAAUCUUGAUGAUGCUGCAUcggc
.((((.((((((((((((((((((.(((((..((........))....))))).)))))))))))))))))).)))).

Structure

u    c                  a     --ag  aau 
 cugg guggcaucaucaagauuc cauga    cu   u
 |||| |||||||||||||||||| |||||    ||    
 ggcU CGUCGUAGUAGUUCUAAG guacu    ga   c
c    A                  A     agua  agu 

Annotation confidence Not enough data

Genome context

Unknown

Mature dpr-miR172b

• Accession: MIMAT0023535
• Description: Digitalis purpurea dpr-miR172b mature miRNA
• Sequence: 54 - AGAAUCUUGAUGAUGCUGCAU - 74
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 22233149
   Comprehensive transcriptome analysis reveals novel genes involved in cardiac glycoside biosynthesis and mlncRNAs associated with secondary metabolism and stress response in Digitalis purpurea
   Wu B, Li Y, Yan H, Ma Y, Luo H, Yuan L, Chen S, Lu S
   BMC Genomics (2012) 13:15