miRBase entry: dpr-MIR397

Stem-loop dpr-MIR397


Accession
MI0020208
Description
Digitalis purpurea dpr-MIR397 precursor miRNA
Gene family
MIPF0000120; MIR397

Literature search
1 open access papers mention dpr-MIR397
(3 sentences)

Sequence

uuaaaaacgCCAUUGAGUGCAGCGUUGAUGauauugcauuuguucgaucucuuuaguccugauuuaucgauuguuauaucgucaaugcugcacuuaauaacguuuuuaa
.((((((((..(((((((((((((((((((((((.(((.(((...((((...........))))...))).))).)))))))))))))))))))))))..)))))))).

Structure
u        CC                       u   u   uuc    ucuu 
 uaaaaacg  AUUGAGUGCAGCGUUGAUGauau gca uug   gauc    u
 ||||||||  ||||||||||||||||||||||| ||| |||   ||||    a
 auuuuugc  uaauucacgucguaacugcuaua ugu agc   uuag    g
a        aa                       u   u   uau    uccu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature dpr-miR397

Accession MIMAT0023537
Description Digitalis purpurea dpr-miR397 mature miRNA
Sequence 10 - CCAUUGAGUGCAGCGUUGAUG - 30
Evidence experimental
454 [1]

References

  1. PubMed ID: 22233149
    Comprehensive transcriptome analysis reveals novel genes involved in cardiac glycoside biosynthesis and mlncRNAs associated with secondary metabolism and stress response in Digitalis purpurea
    Wu B, Li Y, Yan H, Ma Y, Luo H, Yuan L, Chen S, Lu S
    BMC Genomics (2012) 13:15