Stem-loop dpr-MIR408

Accession

MI0020209

Description

Digitalis purpurea dpr-MIR408 precursor miRNA

Gene family

MIPF0000102; MIR408

Literature search

1 open access papers mention dpr-MIR408
(6 sentences)

Sequence

ggagagacggggacgagacagagcauggcaagggaaaaagaaaauggacuuauuugcuuugcccuuuccCUGCACUGCCUCUUCCCUGGCucucc
((((((.((((((.(((.(((.(((.((.(((((..((((.(((((....))))).)))).))))).)).))).))).))).)))))).))))))

Structure

      a      c   a   a   u  c     aa    a     g 
ggagag cgggga gag cag gca gg aaggg  aaag aaaug a
|||||| |||||| ||| ||| ||| || |||||  |||| |||||  
ccucuC GUCCCU CUC GUC CGU cc uuccc  uuuc uuuau c
      G      U   C   A   C  u     -g    g     u 

Annotation confidence Not enough data

Genome context

Unknown

Mature dpr-miR408

• Accession: MIMAT0023538
• Description: Digitalis purpurea dpr-miR408 mature miRNA
• Sequence: 70 - CUGCACUGCCUCUUCCCUGGC - 90
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 22233149
   Comprehensive transcriptome analysis reveals novel genes involved in cardiac glycoside biosynthesis and mlncRNAs associated with secondary metabolism and stress response in Digitalis purpurea
   Wu B, Li Y, Yan H, Ma Y, Luo H, Yuan L, Chen S, Lu S
   BMC Genomics (2012) 13:15