miRBase entry: tca-mir-6007

Stem-loop tca-mir-6007


Accession
MI0020218
Description
Tribolium castaneum tca-mir-6007 precursor miRNA


Sequence

auuggucuuaugguaCAAAGACGUUAGAAACAGGacuacgaaauuaauuaugGUUCUGUCUCUUUCGUUUUGCAucaugggaacaua
..((.(((((((((.(((.((((..(((.(((((((((.((......)).))))))))).)))..))))))).))))))))).))..

Structure
au  g         a   A    UU   A         c  aa 
  ug ucuuauggu CAA GACG  AGA ACAGGacua ga  u
  || ||||||||| ||| ||||  ||| ||||||||| ||   
  ac aggguacuA GUU UUGC  UCU UGUCUUGgu uu  u
au  a         C   -    UU   C         a  aa 


Annotation confidence Not enough data
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Genome context
ChLGX: 5790992-5791078 [-]
Clustered miRNAs
36 other miRNAs are < 10 kb from tca-mir-6007
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-6007-5p

Accession MIMAT0023555
Description Tribolium castaneum tca-miR-6007-5p mature miRNA
Sequence 16 - CAAAGACGUUAGAAACAGG - 34
Evidence experimental
SOLiD [1]

Mature tca-miR-6007-3p

Accession MIMAT0023556
Description Tribolium castaneum tca-miR-6007-3p mature miRNA
Sequence 53 - GUUCUGUCUCUUUCGUUUUGCA - 74
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696

  2. PubMed ID: 22171334
    Detection of microRNAs in color space
    "Marco A, Griffiths-Jones S"
    "Bioinformatics (2012) 28:318-323