miRBase entry: tca-mir-6010

Stem-loop tca-mir-6010


Accession
MI0020221
Description
Tribolium castaneum tca-mir-6010 precursor miRNA


Sequence

auuuuuugcaGUUUGUUUUUGUCGCCUUUUaggcacuuggcguauuuuaacaaguagcugUAAGGGUGCUCGACUUGUAaaucaa
....(((((((...(((...(.(((((((..((((((((...........))))).)))..))))))))..))))))))))....

Structure
auuu       UUU   UUU U       Ua   -     gcgu 
    uuugcaG   GUU   G CGCCUUU  ggc acuug    a
    |||||||   |||   | |||||||  ||| |||||    u
    aaAUGUU   CAG   C GUGGGAA  ucg ugaac    u
aacu       ---   -CU -       Ug   a     aauu 


Annotation confidence Not enough data
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Genome context
ChLG2: 9062069-9062153 [+]

Database links

Mature tca-miR-6010-5p

Accession MIMAT0023561
Description Tribolium castaneum tca-miR-6010-5p mature miRNA
Sequence 11 - GUUUGUUUUUGUCGCCUUUU - 30
Evidence experimental
SOLiD [1]

Mature tca-miR-6010-3p

Accession MIMAT0023562
Description Tribolium castaneum tca-miR-6010-3p mature miRNA
Sequence 61 - UAAGGGUGCUCGACUUGUA - 79
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696

  2. PubMed ID: 22171334
    Detection of microRNAs in color space
    "Marco A, Griffiths-Jones S"
    "Bioinformatics (2012) 28:318-323