miRBase entry: tca-mir-6011

Stem-loop tca-mir-6011


Accession
MI0020222
Description
Tribolium castaneum tca-mir-6011 precursor miRNA


Sequence

cgaguccuCGAUGAUGUAAGCGGAACCguccggguuguagacgaucuugccgGAGAACUGCUCCACGUCCGaggugu
.....(((((..(((((.(((((..(((.(.((((((....)))))).).)))....)))))..))))))))))...

Structure
cgagu     AU     -A     --AA   u c      u 
     ccuCG  GAUGU  AGCGG    CCg c ggguug a
     |||||  |||||  |||||    ||| | ||||||  
     ggaGC  CUGCA  UCGUC    Ggc g ucuagc g
--ugu     --     CC     AAGA   c u      a 


Annotation confidence Not enough data
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Genome context
ChLG3: 24880461-24880537 [-]

Database links

Mature tca-miR-6011-5p

Accession MIMAT0023563
Description Tribolium castaneum tca-miR-6011-5p mature miRNA
Sequence 9 - CGAUGAUGUAAGCGGAACC - 27
Evidence experimental
SOLiD [1]

Mature tca-miR-6011-3p

Accession MIMAT0023564
Description Tribolium castaneum tca-miR-6011-3p mature miRNA
Sequence 53 - GAGAACUGCUCCACGUCCG - 71
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696

  2. PubMed ID: 22171334
    Detection of microRNAs in color space
    "Marco A, Griffiths-Jones S"
    "Bioinformatics (2012) 28:318-323