miRBase entry: tca-mir-6016

Stem-loop tca-mir-6016

Accession

MI0020227

Description

Tribolium castaneum tca-mir-6016 precursor miRNA

Sequence

ggcgcaagaguAGAAGAACAUGUGGUCGUGGUUAUucggcaaugcCACGCCCACAAGUCCUCCUacuuuuacgac
..((.((((((((.((.((.(((((.((((((...........)))))).))))).)).)).)))))))).))..

Structure

gg  c        A  A  A     U      UAUu 
  cg aagaguAG AG AC UGUGG CGUGGU    c
  || |||||||| || || ||||| ||||||    g
  gc uuuucaUC UC UG ACACC GCACcg    g
ca  a        C  C  A     C      uaac

Annotation confidence Not enough data

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Genome context

ChLG7: 14528165-14528239 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tca-mir-6016

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-6016-5p

Accession	MIMAT0023573
Description	Tribolium castaneum tca-miR-6016-5p mature miRNA
Sequence	12 - AGAAGAACAUGUGGUCGUGGUUAU - 35
Evidence	experimental SOLiD [1]

Mature tca-miR-6016-3p

Accession	MIMAT0023574
Description	Tribolium castaneum tca-miR-6016-3p mature miRNA
Sequence	46 - CACGCCCACAAGUCCUCCU - 64
Evidence	experimental SOLiD [1]

References

PubMed ID: 20817720
Functional shifts in insect microRNA evolution
"Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
"Genome Biol Evol (2010) 2:686-696

PubMed ID: 22171334
Detection of microRNAs in color space
"Marco A, Griffiths-Jones S"
"Bioinformatics (2012) 28:318-323