miRBase entry: tca-mir-927b

Stem-loop tca-mir-927b


Accession
MI0020230
Description
Tribolium castaneum tca-mir-927b precursor miRNA


Sequence

cgcccuuugagcccuuccgguUUUAGAAUCUGUACGCUUUGUuguuacuuuaaaaUCACAGAGCUUACGGAUUCUCGaacugguggaguauuaaac
.....(((((((((..(((((((.((((((((((.(((((((.(((.......))).))))))).)))))))))).))))))).)).)).))))).

Structure
cgccc     -  -  uu       U          C       u   ac 
     uuuga gc cc  ccgguUU AGAAUCUGUA GCUUUGU guu  u
     ||||| || ||  ||||||| |||||||||| ||||||| |||  u
     aaauu ug gg  ggucaaG UCUUAGGCAU CGAGACA Uaa  u
----c     a  a  -u       C          U       C   aa 


Annotation confidence Not enough data
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Genome context
ChLG9: 11142398-11142493 [-]

Database links

Mature tca-miR-927b-5p

Accession MIMAT0023579
Description Tribolium castaneum tca-miR-927b-5p mature miRNA
Sequence 22 - UUUAGAAUCUGUACGCUUUGU - 42
Evidence experimental
SOLiD [1]

Mature tca-miR-927b-3p

Accession MIMAT0023580
Description Tribolium castaneum tca-miR-927b-3p mature miRNA
Sequence 56 - UCACAGAGCUUACGGAUUCUCG - 77
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696

  2. PubMed ID: 22171334
    Detection of microRNAs in color space
    "Marco A, Griffiths-Jones S"
    "Bioinformatics (2012) 28:318-323