Stem-loop nta-MIR6020a

Accession

MI0020233

Description

Nicotiana tabacum nta-MIR6020a precursor miRNA

Gene family

MIPF0001610; MIR6020

Sequence

ucccuauacagacgaccuguAAAUGUUUUUCGAGUAUCUUCauucuucccucauccuacugauguuuuagagaggaAGAUACUCAGCAAAACAUUUACugguuacuuguauagaauca
...((((((((..((((.(((((((((((.(((((((((((.(((((....((((.....)))).....))))))))))))))).).))))))))))).))))..)))))))).....

Structure

--ucc        ac    u           U -          a     -cccu    c 
     cuauacag  gacc guAAAUGUUUU C GAGUAUCUUC uucuu     cauc u
     ||||||||  |||| ||||||||||| | |||||||||| |||||     |||| a
     gauauguu  uugg CAUUUACAAAA G CUCAUAGAag gagag     guag c
acuaa        ca    u           C A          -     auuuu    u 

Annotation confidence Not enough data

Genome context

Unknown

Mature nta-miR6020a-5p

• Accession: MIMAT0023584
• Description: Nicotiana tabacum nta-miR6020a-5p mature miRNA
• Sequence: 21 - AAAUGUUUUUCGAGUAUCUUC - 41
• Evidence: not_experimental

Mature nta-miR6020a-3p

• Accession: MIMAT0023585
• Description: Nicotiana tabacum nta-miR6020a-3p mature miRNA
• Sequence: 77 - AGAUACUCAGCAAAACAUUUAC - 98
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22307647
   MicroRNA regulation of plant innate immune receptors
   "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
   "Proc Natl Acad Sci U S A (2012) 109:1790-1795


2. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28