miRBase entry: stu-MIR482c

Stem-loop stu-MIR482c


Accession
MI0020244
Description
Solanum tuberosum stu-MIR482c precursor miRNA
Gene family
MIPF0000403; MIR482

Literature search
8 open access papers mention stu-MIR482c
(44 sentences)

Sequence

gagagauuugggaagcuuuuggagugggugggauggaaaaauaucguauuuauuuuuuuuccuuaaaaggcaaaaaagauaagaaaugagauuUUUCCUAUUCCACCCAUGCCAAuggcuuccaaucauuuacuc
(((((((...(((((((.((((.(((((((((((((((((((.((((.(((((((((((((((....))).))))))))))))..)))).)))))))).))))))))))).)))).)))))))....)))).)))

Structure
   -    -uug       u    a           -        a    -a            -   u 
gag agau    ggaagcu uugg gugggugggau ggaaaaau ucgu  uuuauuuuuuuu ccu a
||| ||||    ||||||| |||| ||||||||||| |||||||| ||||  |||||||||||| |||  
cuc uuua    ccuucgg AACC UACCCACCUUA CCUUUuua agua  gaauagaaaaaa gga a
   a    cuaa       u    G           U        g    aa            c   a 


Annotation confidence Not enough data
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Genome context
JH138014.1: 530969-531103 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from stu-MIR482c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature stu-miR482c

Accession MIMAT0023596
Description Solanum tuberosum stu-miR482c mature miRNA
Sequence 94 - UUUCCUAUUCCACCCAUGCCAA - 115
Evidence not_experimental

References

  1. PubMed ID: 22307647
    MicroRNA regulation of plant innate immune receptors
    "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
    "Proc Natl Acad Sci U S A (2012) 109:1790-1795