miRBase entry: stu-MIR482b

Stem-loop stu-MIR482b


Accession
MI0020245
Description
Solanum tuberosum stu-MIR482b precursor miRNA
Gene family
MIPF0000403; MIR482

Literature search
8 open access papers mention stu-MIR482b
(38 sentences)

Sequence

gaauguuucagggagcuuuuGGAGUGGGUGGCAUGGUAAGAuaucauauuuuguuuuucauaaaaaauggaauugaaaucUUACCGAUUCCCCCCAUUCCAAuggcuuccagucauuucucc
(((((.....(((((((.((((((((((.((.((((((((((.(((.(((((((((((....)))))))))))))).)))))))).)).)).)))))))))).)))))))...)))))....

Structure
----     uuuca       u          U  C  -        a   u           c 
    gaaug     gggagcu uuGGAGUGGG GG AU GGUAAGAu uca auuuuguuuuu a
    |||||     ||||||| |||||||||| || || |||||||| ||| |||||||||||  
    uuuac     ccuucgg AACCUUACCC CC UA CCAUUcua agu uaagguaaaaa u
ccuc     --uga       u          C  U  G        a   -           a 


Annotation confidence Not enough data
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Genome context
JH138014.1: 538021-538142 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from stu-MIR482b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature stu-miR482b-3p

Accession MIMAT0023597
Description Solanum tuberosum stu-miR482b-3p mature miRNA
Sequence 81 - UUACCGAUUCCCCCCAUUCCAA - 102
Evidence experimental
Illumina [2]

Mature stu-miR482b-5p

Accession MIMAT0031160
Description Solanum tuberosum stu-miR482b-5p mature miRNA
Sequence 21 - GGAGUGGGUGGCAUGGUAAGA - 41
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22307647
    MicroRNA regulation of plant innate immune receptors
    "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
    "Proc Natl Acad Sci U S A (2012) 109:1790-1795

  2. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233