miRBase entry: sly-MIR6027

Stem-loop sly-MIR6027


Accession
MI0020258
Description
Solanum lycopersicum sly-MIR6027 precursor miRNA
Gene family
MIPF0001424; MIR6027

Literature search
11 open access papers mention sly-MIR6027
(22 sentences)

Sequence

uuucguaauuuuacaugauuAUGGGUAGCACAAGGAUUAAUGugaaacagaaaagugauaugcaaagaagauggagauucaauuguuuauuguuacgaaaaaaacacuuuuguguuucucgUGAAUCCUUCGGCUAUCCAUAAucauguugaauauguuauuu
...((((.(((.(((((((((((((((((..(((((((.(((.((((((.(((((((............((((((.(......).)))))).............))))))).)))))).))).)))))))..))))))))))))))))).)))))))......

Structure
---uuu    a   u                 AC       A   u      g       -auaugcaaagaa      g uu 
      cgua uuu acaugauuAUGGGUAGC  AAGGAUU AUG gaaaca aaaagug             gaugga a  c
      |||| ||| |||||||||||||||||  ||||||| ||| |||||| |||||||             |||||| |   
      guau aag uguacuAAUACCUAUCG  UUCCUAA Ugc cuuugu uuuucac             uuauuu u  a
uuuauu    -   u                 GC       G   u      g       aaaaaaagcauug      g ua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature sly-miR6027-3p

Accession MIMAT0023611
Description Solanum lycopersicum sly-miR6027-3p mature miRNA
Sequence 122 - UGAAUCCUUCGGCUAUCCAUAA - 143
Evidence experimental
Illumina [2]

Mature sly-miR6027-5p

Accession MIMAT0032133
Description Solanum lycopersicum sly-miR6027-5p mature miRNA
Sequence 21 - AUGGGUAGCACAAGGAUUAAUG - 42
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22307647
    MicroRNA regulation of plant innate immune receptors
    "Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B"
    "Proc Natl Acad Sci U S A (2012) 109:1790-1795

  2. PubMed ID: 24376253
    Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
    Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
    J Exp Bot (2014) 65:725-739