Stem-loop bna-MIR160a

Accession

MI0020264

Description

Brassica napus bna-MIR160a precursor miRNA

Gene family

MIPF0000032; MIR160

Literature search

10 open access papers mention bna-MIR160a
(52 sentences)

Sequence

guaguuguauaagauguguaUGCCUGGCUCCCUGUAUGCCAuccucuaagcucaucgaccauugaugaccuccgugaauggcguaugaggagccaugcauauuuucauauacauuuaca
((((.((((((.((...((((((.(((((((.((((((((((.(.(..((.(((((((...))))))).))..).).)))))))))).))))))).))))))..)).)))))).)))).

Structure

-    u      a  ugu      C       C          c u ua  c       c 
 guag uguaua ga   guaUGC UGGCUCC UGUAUGCCAu c c  ag ucaucga  
 |||| |||||| ||   |||||| ||||||| |||||||||| | |  || ||||||| c
 cauu acauau cu   uauacg accgagg guaugcggua g g  uc aguaguu  
a    u      a  -uu      u       a          a u cc  c       a 

Annotation confidence Not enough data

Genome context

EM:AC189270: 107472-107590 [+]

Mature bna-miR160a

• Accession: MIMAT0023617
• Description: Brassica napus bna-miR160a mature miRNA
• Sequence: 21 - UGCCUGGCUCCCUGUAUGCCA - 41
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22138974
   Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes
   "Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ"
   "Plant Physiol (2012) 158:813-823