Stem-loop bna-MIR160c

Accession

MI0020266

Description

Brassica napus bna-MIR160c precursor miRNA

Gene family

MIPF0000032; MIR160

Literature search

10 open access papers mention bna-MIR160c
(47 sentences)

Sequence

gugugugcucuuauggucgUGCCUGGCUCCCUGUAUGCCAcaaguauauaccgaucucguuacgaaaucuguggcuaguggcguacagaguagucaagcaugaccaaagcuuuuc
......(((....(((((((((.((((((.(((((((((((.(((...(((.(((.((.....)).))).)))))).))))))))))).).))))).))))))))).))).....

Structure

gugugu   cuua         C     - C           a   aua   c   c  g 
      gcu    uggucgUGC UGGCU C CUGUAUGCCAc agu   uac gau uc u
      |||    ||||||||| ||||| | ||||||||||| |||   ||| ||| || u
      cga    accaguacg acuga g gacaugcggug ucg   gug cua ag a
-cuuuu   ---a         a     u a           a   ---   u   a  c 

Annotation confidence Not enough data

Genome context

EM:AC189471: 747-861 [+]

Mature bna-miR160c

• Accession: MIMAT0023619
• Description: Brassica napus bna-miR160c mature miRNA
• Sequence: 20 - UGCCUGGCUCCCUGUAUGCCA - 40
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22138974
   Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes
   "Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ"
   "Plant Physiol (2012) 158:813-823