Stem-loop bna-MIR162a

Accession

MI0020268

Description

Brassica napus bna-MIR162a precursor miRNA

Gene family

MIPF0000127; MIR162_1

Literature search

5 open access papers mention bna-MIR162a
(6 sentences)

Sequence

agugaaagaugcuggaggcagcgguugaucgaucucuuugugggaauuuuugaaaaacaaaauuaaaagcaugaacagaUCGAUAAACCUGUGCAUCCAGcggucgccucuuca
.((((....(((((((.(((..((((.((((((((.((((((.....(((((.....))))).......)))))).)))))))).))))..))).))))))).)))).......

Structure

------a    aaga       g   gc    g        c      --ggaau     a 
       guga    ugcugga gca  gguu aucgaucu uuugug       uuuug a
       ||||    ||||||| |||  |||| |||||||| ||||||       ||||| a
       cgcu    gcGACCU CGU  CCAA UAGCUaga aaguac       aaaac a
acuucuc    ---g       A   GU    A        c      gaaaauu     a 

Annotation confidence Not enough data

Genome context

EM:AC189332: 84098-84211 [-]

Mature bna-miR162a

• Accession: MIMAT0023621
• Description: Brassica napus bna-miR162a mature miRNA
• Sequence: 80 - UCGAUAAACCUGUGCAUCCAG - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22138974
   Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes
   "Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ"
   "Plant Physiol (2012) 158:813-823