miRBase entry: bna-MIR164d

Stem-loop bna-MIR164d


Accession
MI0020271
Description
Brassica napus bna-MIR164d precursor miRNA
Gene family
MIPF0000045; MIR164

Literature search
9 open access papers mention bna-MIR164d
(13 sentences)

Sequence

guaucacuugcUGGAGAAGCAGGGCACGUGCGaacaaaugaguuugagcaguacauuuugaucaaauauucgcacguguucuacuacuccaacacguguaucuccccuuc
....(((.((.(((((.((.((((((((((((((.......((((((.(((......))).)))))).)))))))))))))).)).))))).)).)))............

Structure
--------guau   u  c     A  C              caaauga      g   ua 
            cac ug UGGAG AG AGGGCACGUGCGaa       guuuga cag  c
            ||| || ||||| || ||||||||||||||       |||||| |||   
            gug ac accuc uc ucuugugcacgcuu       uaaacu guu  a
cuuccccucuau   c  a     a  a              ------a      a   uu 


Annotation confidence Not enough data
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Genome context
EM:AC189657: 106780-106889 [+]

Database links

Mature bna-miR164d

Accession MIMAT0023624
Description Brassica napus bna-miR164d mature miRNA
Sequence 12 - UGGAGAAGCAGGGCACGUGCG - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22138974
    Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes
    "Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ"
    "Plant Physiol (2012) 158:813-823