miRBase entry: bna-MIR172d

Stem-loop bna-MIR172d


Accession
MI0020277
Description
Brassica napus bna-MIR172d precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
12 open access papers mention bna-MIR172d
(46 sentences)

Sequence

uuuuugcuauugcaucaucaucaagauucagaaaucauauuccuugauggguucuccuucgagccugucuuuuuugguuugAGAAUCUUGAUGAUGCUGCAGcggcgauuaaa
...(((((.(((((.((((((((((((((..((((((........(((((((((......))))))))).....))))))..)))))))))))))).))))).))))).....

Structure
--uuu     a     u              ag      uauuccuu         uc 
     uugcu uugca caucaucaagauuc  aaauca        gauggguuc  c
     ||||| ||||| ||||||||||||||  ||||||        |||||||||   
     agcgg GACGU GUAGUAGUUCUAAG  uuuggu        cuguccgag  u
aaauu     c     C              Ag      ---uuuuu         cu 


Annotation confidence Not enough data
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Genome context
EM:AC189487: 133692-133804 [+]

Database links

Mature bna-miR172d

Accession MIMAT0023630
Description Brassica napus bna-miR172d mature miRNA
Sequence 82 - AGAAUCUUGAUGAUGCUGCAG - 102
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22138974
    Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes
    "Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ"
    "Plant Physiol (2012) 158:813-823