miRBase entry: bna-MIR395a

Stem-loop bna-MIR395a


Accession
MI0020283
Description
Brassica napus bna-MIR395a precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
6 open access papers mention bna-MIR395a
(18 sentences)

Sequence

uccuagaguuccucugagcacuucauuggguauacaauuucuuaugaagauuacccaCUGAAGUGUUUGGGGGAACUCcugga
(((..((((((((((((((((((((.((((((.....((((....))))..)))))).))))))))))))))))))))..)))

Structure
   ua                    u      uacaa    u 
ucc  gaguuccucugagcacuuca ugggua     uuuc u
|||  |||||||||||||||||||| ||||||     ||||  
agg  CUCAAGGGGGUUUGUGAAGU acccau     gaag a
   uc                    C      ---ua    u 


Annotation confidence Not enough data
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Genome context
EM:AC189385: 84299-84381 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bna-MIR395a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bna-miR395a

Accession MIMAT0023636
Description Brassica napus bna-miR395a mature miRNA
Sequence 58 - CUGAAGUGUUUGGGGGAACUC - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22138974
    Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes
    "Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ"
    "Plant Physiol (2012) 158:813-823