miRBase entry: ame-mir-6047a

Stem-loop ame-mir-6047a


Accession
MI0020318
Description
Apis mellifera ame-mir-6047a precursor miRNA


Sequence

uguuuuguuuAGUGGACUGACUGGCCUGUGCUgcuucccgcagUCCACAGCCUACAGUCCACAAUuuccugaucu
...........((((((((...(((.((((((((.....))))..)))))))..)))))))).............

Structure
--uguuuuguuuA        ACU   C    --    u 
             GUGGACUG   GGC UGUG  CUgc u
             ||||||||   ||| ||||  |||| c
             CACCUGAC   CCG ACAC  gacg c
ucuaguccuuUAA        -AU   -    CU    c 


Annotation confidence Not enough data
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Genome context
GL630354.1: 170663-170737 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ame-mir-6047a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ame-miR-6047a-3p

Accession MIMAT0023671
Description Apis mellifera ame-miR-6047a-3p mature miRNA
Sequence 44 - UCCACAGCCUACAGUCCACAAU - 65
Evidence experimental
Illumina [1,3]

Mature ame-miR-6047a-5p

Accession MIMAT0037456
Description Apis mellifera ame-miR-6047a-5p mature miRNA
Sequence 11 - AGUGGACUGACUGGCCUGUGCU - 32
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22458842
    Next-generation small RNA sequencing for microRNAs profiling in Apis mellifera: comparison between nurses and foragers
    "Liu F, Peng W, Li Z, Li W, Li L, Pan J, Zhang S, Miao Y, Chen S, Su S"
    "Insect Mol Biol (2012) 21:297-303

  2. PubMed ID: 22409512
    Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
    "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
    "Genes Brain Behav (2012) 11:660-670

  3. PubMed ID: 26853694
    MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.)
    "Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simoes ZL"
    "Insect Mol Biol (2016) 25:216-226