miRBase entry: ame-mir-6048

Stem-loop ame-mir-6048


Accession
MI0020319
Description
Apis mellifera ame-mir-6048 precursor miRNA


Sequence

ugugagggccaaucagcggucgaaccucgucgauguuagcucggcgugccgaggcgaacuucAGAGGCGAGGUGGACCGACUGGUaugugcaaca
(((..(.((..((((((((((..((((((((((.(((.((((((....)))).)).))).))...)))))))).))))).)))))..)).).)))

Structure
   ga g  ca     -     ga        ---  u   a  -    c 
ugu  g gc  aucag cgguc  accucguc   ga guu gc ucgg g
|||  | ||  ||||| |||||  ||||||||   || ||| || ||||  
aca  c ug  UGGUC GCCAG  UGGAGCGG   cu caa cg agcc u
   -a g  ua     A     -G        AGA  u   g  g    g 


Annotation confidence Not enough data
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Genome context
CM000061.5: 1909421-1909515 [-]

Database links

Mature ame-miR-6048-3p

Accession MIMAT0023672
Description Apis mellifera ame-miR-6048-3p mature miRNA
Sequence 63 - AGAGGCGAGGUGGACCGACUGGU - 85
Evidence experimental
Illumina [1-3]

References

  1. PubMed ID: 22458842
    Next-generation small RNA sequencing for microRNAs profiling in Apis mellifera: comparison between nurses and foragers
    "Liu F, Peng W, Li Z, Li W, Li L, Pan J, Zhang S, Miao Y, Chen S, Su S"
    "Insect Mol Biol (2012) 21:297-303

  2. PubMed ID: 22409512
    Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
    "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
    "Genes Brain Behav (2012) 11:660-670

  3. PubMed ID: 26853694
    MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.)
    "Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simoes ZL"
    "Insect Mol Biol (2016) 25:216-226