Stem-loop ppy-mir-1199

Accession

MI0020341

Description

Pongo pygmaeus ppy-mir-1199 precursor miRNA

Gene family

MIPF0001659; mir-1199

Sequence

agccugcgcaggagccggggCCUGAGCCCGGGCCGCGCAGgccgugaacucgucgagcugcgcgUGCGGCCGGUGCUCAACCUGCcggguccuggcccggcgcucccgcgcgcccugga
..(((((((.((((((.(((((.(.((((..(((((((((..((((....)).))..))))))).))(((.(((.....))).))))))).).))))).).))))).)))))....)).

Structure

ag  ----     a     - g     U A    GGGCCGCGCAGgccgugaacucgucgagcugcgcgUGC   C   G 
  cc    ugcgc ggagc c gggCC G GCCC                                      GGC GGU C
  ||    ||||| ||||| | ||||| | ||||                                      ||| ||| U
  gg    gcgcg ccucg g cccgg c uggg                                      cCG CCA C
-a  uccc     c     c g     u c    --------------------------------------   U   A 

Annotation confidence Not enough data

Genome context

chr19: 14201751-14201869 [+]

Mature ppy-miR-1199-5p

• Accession: MIMAT0031121
• Description: Pongo pygmaeus ppy-miR-1199-5p mature miRNA
• Sequence: 21 - CCUGAGCCCGGGCCGCGCAG - 40
• Evidence: not_experimental

Mature ppy-miR-1199-3p

• Accession: MIMAT0031122
• Description: Pongo pygmaeus ppy-miR-1199-3p mature miRNA
• Sequence: 65 - UGCGGCCGGUGCUCAACCUGC - 85
• Evidence: not_experimental

References

1. PubMed ID: 23229173
   Human hepatocellular carcinoma cell-specific miRNAs reveal the differential expression of miR-24 and miR-27a in cirrhotic/non-cirrhotic HCC
   Salvi A, Abeni E, Portolani N, Barlati S, De Petro G
   Int J Oncol (2013) 42:391-402