miRBase entry: ptr-mir-1199

Stem-loop ptr-mir-1199


Accession
MI0020344
Description
Pan troglodytes ptr-mir-1199 precursor miRNA
Gene family
MIPF0001659; mir-1199


Sequence

agccugcgccggagccggggCCUGAGCCCGGGCCGCGCAGgccgugaacucgucgagcugcgcgUGCGGCCGGUGCUCAACCUGCcggguccuggccccgcgcucccgcgcgcccugga
..(((((((.((((((((((((.(.((((..(((((((((..((((....)).))..))))))).))(((.(((.....))).))))))).).))))))).))))).)))))....)).

Structure
ag  ----     c     -       U A    GGGCCGCGCAGgccgugaacucgucgagcugcgcgUGC   C   G 
  cc    ugcgc ggagc cggggCC G GCCC                                      GGC GGU C
  ||    ||||| ||||| ||||||| | ||||                                      ||| ||| U
  gg    gcgcg ccucg gccccgg c uggg                                      cCG CCA C
-a  uccc     c     c       u c    --------------------------------------   U   A 


Annotation confidence Not enough data
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Genome context
chr19: 14865660-14865778 [+]

Database links

Mature ptr-miR-1199-5p

Accession MIMAT0031127
Description Pan troglodytes ptr-miR-1199-5p mature miRNA
Sequence 21 - CCUGAGCCCGGGCCGCGCAG - 40
Evidence not_experimental

Mature ptr-miR-1199-3p

Accession MIMAT0031128
Description Pan troglodytes ptr-miR-1199-3p mature miRNA
Sequence 65 - UGCGGCCGGUGCUCAACCUGC - 85
Evidence not_experimental

References

  1. PubMed ID: 23229173
    Human hepatocellular carcinoma cell-specific miRNAs reveal the differential expression of miR-24 and miR-27a in cirrhotic/non-cirrhotic HCC
    Salvi A, Abeni E, Portolani N, Barlati S, De Petro G
    Int J Oncol (2013) 42:391-402