miRBase entry: cgr-mir-125a

Stem-loop cgr-mir-125a


Accession
MI0020385
Description
Cricetulus griseus cgr-mir-125a precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

47124 reads, 628 reads per million, 6 experiments
gccucugggUCCCUGAGACCCUUUAACCUGUGAggacguccagggucACAGGUGAGGUUCUUGGGAGCcuggcgccug
(((...((.((((.((((.((((..((((((((...(.....)..)))))))))))).)))))))).)).))).....

Structure
-----   ucu  g    U    C    UA        gga g 
     gcc   gg UCCC GAGA CCUU  ACCUGUGA   c u
     |||   || |||| |||| ||||  ||||||||   | c
     cgg   cC AGGG UUCU GGAG  UGGACAcu   g c
guccg   --u  G    -    U    --        -gg a 


Annotation confidence High
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cgr-miR-125a-5p

Accession MIMAT0023741
Description Cricetulus griseus cgr-miR-125a-5p mature miRNA
Sequence 10 - UCCCUGAGACCCUUUAACCUGUGA - 33
Evidence experimental
Illumina [1]

Mature cgr-miR-125a-3p

Accession MIMAT0023742
Description Cricetulus griseus cgr-miR-125a-3p mature miRNA
Sequence 48 - ACAGGUGAGGUUCUUGGGAGC - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75