Stem-loop cgr-mir-1306

Accession

MI0020393

Description

Cricetulus griseus cgr-mir-1306 precursor miRNA

Gene family

MIPF0000531; mir-1306

Sequence

11024 reads, 83 reads per million, 6 experiments

cagucuccaCCACCUCCCCUGCAAACGUCCagugaugcagagguaauggACGUUGGCUCUGGUGGUGAUGgacaguccga
..((((.(((((((......((.((((((((...((......))..)))))))).))...)))))))..)))).......

Structure

-----ca    -c       UCCCCU  A        gug  gc 
       gucu  caCCACC      GC AACGUCCa   au  a
       ||||  |||||||      || ||||||||   ||   
       cagG  GUGGUGG      CG UUGCAggu   ug  g
agccuga    UA       ---UCU  G        -aa  ga 

Annotation confidence Low

Genome context

JH000319.1: 1034288-1034367 [+]

Mature cgr-miR-1306-5p

• Accession: MIMAT0023752
• Description: Cricetulus griseus cgr-miR-1306-5p mature miRNA
• Sequence: 10 - CCACCUCCCCUGCAAACGUCC - 30
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-1306-3p

• Accession: MIMAT0023753
• Description: Cricetulus griseus cgr-miR-1306-3p mature miRNA
• Sequence: 50 - ACGUUGGCUCUGGUGGUGAUG - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75