Stem-loop cgr-mir-139

Accession

MI0020401

Description

Cricetulus griseus cgr-mir-139 precursor miRNA

Gene family

MIPF0000117; mir-139

Sequence

12786 reads, 187 reads per million, 6 experiments

cagguguauUCUACAGUGCACGUGUCUCCAGuguggcucagaggcUGGAGACGCGGCCCUGUUGGAGUaacaacugaa
(((.((((((((((((.((.((((((((((((.(.......).)))))))))))))).))).)))))).))).)))..

Structure

--   g   -      -   U  A            g gg 
  cag ugu auUCUA CAG GC CGUGUCUCCAGu u  c
  ||| ||| |||||| ||| || |||||||||||| |  u
  guc aca UGAGGU GUC CG GCGCAGAGGUcg a  c
aa   a   a      U   C  -            g ga 

Annotation confidence Not enough data

Genome context

JH000978.1: 521937-522014 [+]

Mature cgr-miR-139-5p

• Accession: MIMAT0023765
• Description: Cricetulus griseus cgr-miR-139-5p mature miRNA
• Sequence: 10 - UCUACAGUGCACGUGUCUCCAG - 31
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-139-3p

• Accession: MIMAT0023766
• Description: Cricetulus griseus cgr-miR-139-3p mature miRNA
• Sequence: 46 - UGGAGACGCGGCCCUGUUGGAGU - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75