miRBase entry: cgr-mir-146a

Stem-loop cgr-mir-146a


Accession
MI0020407
Description
Cricetulus griseus cgr-mir-146a precursor miRNA
Gene family
MIPF0000103; mir-146

Literature search
1 open access papers mention cgr-mir-146a
(1 sentences)

Sequence

46366 reads, 659 reads per million, 6 experiments
ccucagcucUGAGAACUGAAUUCCAUGGGUUgugucaaugucagaccugugaaguucaguucuucagcugggauagcucu
.(((((((..((((((((((((.((((((((.((.......)))))))))).)))))))))))).)))))))........

Structure
-------c       cU            C        g  uc 
        cucagcu  GAGAACUGAAUU CAUGGGUU ug  a
        |||||||  |||||||||||| |||||||| ||  a
        gggucga  uucuugacuuga guguccag ac  u
ucucgaua       -c            a        -  ug 


Annotation confidence Low
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Genome context
JH000303.1: 1014971-1015050 [+]

Database links

Mature cgr-miR-146a

Accession MIMAT0023774
Description Cricetulus griseus cgr-miR-146a mature miRNA
Sequence 10 - UGAGAACUGAAUUCCAUGGGUU - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75