miRBase entry: cgr-mir-15a

Stem-loop cgr-mir-15a


Accession
MI0020416
Description
Cricetulus griseus cgr-mir-15a precursor miRNA
Gene family
MIPF0000006; mir-15

Literature search
2 open access papers mention cgr-mir-15a
(5 sentences)

Sequence

54110 reads, 782 reads per million, 6 experiments
ggaguaaagUAGCAGCACAUAAUGGUUUGUGGAuuuugaaaaggugCAGGCCAUAUUGUGCUGCCUCAaaauacaagg
........(..((((((((..((((((((((.............))))))))))..))))))))..)...........

Structure
---ggaguaaa UA        UA          GAuuu 
           g  GCAGCACA  AUGGUUUGUG     u
           |  ||||||||  ||||||||||     g
           C  CGUCGUGU  UACCGGACgu     a
ggaacauaaaA UC        UA          ggaaa 


Annotation confidence High
Do you think this miRNA is real?

Genome context
JH000694.1: 802850-802927 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cgr-mir-15a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-15a-5p

Accession MIMAT0023789
Description Cricetulus griseus cgr-miR-15a-5p mature miRNA
Sequence 10 - UAGCAGCACAUAAUGGUUUGUGGA - 33
Evidence experimental
Illumina [1]

Mature cgr-miR-15a-3p

Accession MIMAT0023790
Description Cricetulus griseus cgr-miR-15a-3p mature miRNA
Sequence 47 - CAGGCCAUAUUGUGCUGCCUCA - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75