Stem-loop cgr-mir-183

Accession

MI0020425

Description

Cricetulus griseus cgr-mir-183 precursor miRNA

Gene family

MIPF0000066; mir-183

Literature search

1 open access papers mention cgr-mir-183
(1 sentences)

Sequence

5396 reads, 71 reads per million, 6 experiments

uguucuguguAUGGCACUGGUAGAAUUCACUGugaacagucucagucagugaauuaccgaagggccauaaacagagcaga
((((((((.((((((.((((((..(((((((((((......)))..))))))))))))..)).)))))).))))))))..

Structure

--        g      A  --    GA        --   ac 
  uguucugu uAUGGC CU  GGUA  AUUCACUG  uga  a
  |||||||| |||||| ||  ||||  ||||||||  |||   
  acgagaca auaccg ga  ccau  uaagugac  acu  g
ag        a      g  ag    --        ug   cu 

Annotation confidence Low

Genome context

JH000073.1: 2322620-2322699 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-183

Mature cgr-miR-183

• Accession: MIMAT0023806
• Description: Cricetulus griseus cgr-miR-183 mature miRNA
• Sequence: 11 - AUGGCACUGGUAGAAUUCACUG - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75