Stem-loop cgr-mir-194

Accession

MI0020440

Description

Cricetulus griseus cgr-mir-194 precursor miRNA

Gene family

MIPF0000055; mir-194

Sequence

29103 reads, 456 reads per million, 6 experiments

gucaucacaUGUAACAGCAACUCCAUGUGGAcugugggcugacuuccaguggaggugcuguuacucuugauggccaccaa
(((((((...(((((((((.((((((.((((..((......)).)))))))))).)))))))))...)))))))......

Structure

------       caU         A      G    cu  gg 
      gucauca   GUAACAGCA CUCCAU UGGA  gu  g
      |||||||   ||||||||| |||||| ||||  ||   
      cgguagu   cauugucgu gaggug accu  ca  c
aaccac       ucu         g      -    -u  gu 

Annotation confidence Not enough data

Genome context

JH000002.1: 3326794-3326873 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-194

Mature cgr-miR-194

• Accession: MIMAT0023827
• Description: Cricetulus griseus cgr-miR-194 mature miRNA
• Sequence: 10 - UGUAACAGCAACUCCAUGUGGA - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75