Stem-loop cgr-mir-1949

Accession

MI0020441

Description

Cricetulus griseus cgr-mir-1949 precursor miRNA

Sequence

4764 reads, 52 reads per million, 6 experiments

cagcagccaauagcugguuggcauucuggccugguucaugccaacucuguuguuaacUAUACCAGGAUGUCAGCAUAGUUucuuaccccc
((((........))))(((((((((((((..(((((.....((((...))))..)))))..)))))))))))))................

Structure

cagcagccaauagcug             cc     caugc    u 
                guuggcauucugg  ugguu     caac  
                |||||||||||||  |||||     |||| c
                CGACUGUAGGACC  AUcaa     guug  
cccccauucuUUGAUA             AU     ---uu    u 

Annotation confidence Low

Genome context

JH000776.1: 128277-128366 [+]

Mature cgr-miR-1949

• Accession: MIMAT0023828
• Description: Cricetulus griseus cgr-miR-1949 mature miRNA
• Sequence: 58 - UAUACCAGGAUGUCAGCAUAGUU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75