miRBase entry: cgr-mir-195

Stem-loop cgr-mir-195


Accession
MI0020442
Description
Cricetulus griseus cgr-mir-195 precursor miRNA
Gene family
MIPF0000006; mir-15


Sequence

7389 reads, 118 reads per million, 6 experiments
uccuggcucUAGCAGCACAGAAAUAUUGGCAcugggaagcgagucugccaauauuggcuguguugcuccaggcagggugg
(((((.((..((((((((((.((((((((((((.(....).)))..)))))))))..))))))))))..)).)))))...

Structure
---     g  cU          -A         --   g g 
   uccug cu  AGCAGCACAG  AAUAUUGGC  Acu g a
   ||||| ||  ||||||||||  |||||||||  ||| |  
   gggac ga  ucguuguguc  uuauaaccg  uga c a
ggu     g  cc          gg         uc   g g 


Annotation confidence Not enough data
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Genome context
JH000064.1: 2276744-2276823 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cgr-mir-195
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-195

Accession MIMAT0023829
Description Cricetulus griseus cgr-miR-195 mature miRNA
Sequence 10 - UAGCAGCACAGAAAUAUUGGCA - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75