Stem-loop cgr-mir-196a

Accession

MI0020444

Description

Cricetulus griseus cgr-mir-196a precursor miRNA

Gene family

MIPF0000031; mir-196

Sequence

747036 reads, 10406 reads per million, 6 experiments

aucuguggcuUAGGUAGUUUCAUGUUGUUGGGauugaguuuugaacUCGGCAACAAGAAACUGCCUGAguuacauca
...((((((((((((((((((.((((((((((.((........)))))))))))).))))))))))))))))))...

Structure

auc                  A          a  gag 
   uguggcuUAGGUAGUUUC UGUUGUUGGG uu   u
   |||||||||||||||||| |||||||||| ||    
   acauugAGUCCGUCAAAG ACAACGGCUc aa   u
acu                  A          -  guu 

Annotation confidence Not enough data

Genome context

JH000760.1: 79295-79371 [-]

Mature cgr-miR-196a-5p

• Accession: MIMAT0023831
• Description: Cricetulus griseus cgr-miR-196a-5p mature miRNA
• Sequence: 11 - UAGGUAGUUUCAUGUUGUUGGG - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-196a-3p

• Accession: MIMAT0023832
• Description: Cricetulus griseus cgr-miR-196a-3p mature miRNA
• Sequence: 47 - UCGGCAACAAGAAACUGCCUGA - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75