miRBase entry: cgr-mir-199a

Stem-loop cgr-mir-199a


Accession
MI0020448
Description
Cricetulus griseus cgr-mir-199a precursor miRNA
Gene family
MIPF0000040; mir-199


Sequence

26186 reads, 359 reads per million, 6 experiments
ccccgccauCCCAGUGUUCAGACUAGCUGUUCagcaggcugugauauguACAGUAGUCUGCACAUUGGUUaggcugggcg
(((.(((...(((((((.(((((((.((((.((.((.....))...)).))))))))))).)))))))...))).)))..

Structure
--   c   auC       U       G    U  --g  g 
  ccc gcc   CCAGUGU CAGACUA CUGU Ca   ca g
  ||| |||   ||||||| ||||||| |||| ||   || c
  ggg cgg   GGUUACA GUCUGAU GACA gu   gu u
gc   u   aUU       C       -    u  aua  g 


Annotation confidence Low
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Genome context
JH000173.1: 721995-722074 [+]

Database links

Mature cgr-miR-199a-5p

Accession MIMAT0023836
Description Cricetulus griseus cgr-miR-199a-5p mature miRNA
Sequence 10 - CCCAGUGUUCAGACUAGCUGUUC - 32
Evidence experimental
Illumina [1]

Mature cgr-miR-199a-3p

Accession MIMAT0023837
Description Cricetulus griseus cgr-miR-199a-3p mature miRNA
Sequence 50 - ACAGUAGUCUGCACAUUGGUU - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75