miRBase entry: cgr-mir-19b

Stem-loop cgr-mir-19b


Accession
MI0020451
Description
Cricetulus griseus cgr-mir-19b precursor miRNA
Gene family
MIPF0000011; mir-19

Literature search
1 open access papers mention cgr-mir-19b
(2 sentences)

Sequence

17361 reads, 253 reads per million, 6 experiments
gucuaugguuAGUUUUGCAGGUUUGCAUCCAGCuguauaauacucugcUGUGCAAAUCCAUGCAAAACUGAcuguggugg
..(((((((((((((((((((((((((..((((.............)))))))))).)).)))))))))))))))))...

Structure
-gu                 -  -      UC    uguau 
   cuaugguuAGUUUUGCA GG UUUGCA  CAGC     a
   ||||||||||||||||| || ||||||  ||||     a
   ggugucAGUCAAAACGU CC AAACGU  GUcg     u
ggu                 A  U      --    ucuca 


Annotation confidence Not enough data
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Genome context
JH001979.1: 109073-109152 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from cgr-mir-19b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-19b-5p

Accession MIMAT0023840
Description Cricetulus griseus cgr-miR-19b-5p mature miRNA
Sequence 11 - AGUUUUGCAGGUUUGCAUCCAGC - 33
Evidence experimental
Illumina [1]

Mature cgr-miR-19b-3p

Accession MIMAT0023841
Description Cricetulus griseus cgr-miR-19b-3p mature miRNA
Sequence 49 - UGUGCAAAUCCAUGCAAAACUGA - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75