miRBase entry: cgr-mir-204

Stem-loop cgr-mir-204


Accession
MI0020454
Description
Cricetulus griseus cgr-mir-204 precursor miRNA
Gene family
MIPF0000042; mir-204

Literature search
1 open access papers mention cgr-mir-204
(4 sentences)

Sequence

11582 reads, 158 reads per million, 6 experiments
acucguggacUUCCCUUUGUCAUCCUAUGCCUgagaauauaugaaggaggcugggaaggcaaagggacguucaauuguca
((...(((((.((((((((((.(((((.((((...............))))))))).)))))))))).)))))...))..

Structure
--  ucg     U          A     U    gagaau 
  ac   uggac UCCCUUUGUC UCCUA GCCU      a
  ||   ||||| |||||||||| ||||| ||||      u
  ug   acuug agggaaacgg agggu cgga      a
ac  uua     c          a     -    ggaagu 


Annotation confidence Low
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Genome context
JH001792.1: 105263-105342 [-]

Database links

Mature cgr-miR-204

Accession MIMAT0023844
Description Cricetulus griseus cgr-miR-204 mature miRNA
Sequence 11 - UUCCCUUUGUCAUCCUAUGCCU - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75