miRBase entry: cgr-mir-23b

Stem-loop cgr-mir-23b


Accession
MI0020467
Description
Cricetulus griseus cgr-mir-23b precursor miRNA
Gene family
MIPF0000027; mir-23

Literature search
1 open access papers mention cgr-mir-23b
(3 sentences)

Sequence

12876 reads, 167 reads per million, 6 experiments
cuggcugcuuGGGUUCCUGGCAUGCUGAUUugugacuugagauuaaaAUCACAUUGCCAGGGAUUACCacgcaacca
.(((.(((.(((((((((((((((.((((((..............)))))))).))))))))))..))).))).)))

Structure
c   c   u   --          -  C      gugacu 
 ugg ugc uGG  GUUCCUGGCA UG UGAUUu      u
 ||| ||| |||  |||||||||| || ||||||       
 acc acg aCC  UAGGGACCGU AC ACUAaa      g
-   a   c   AU          U  -      auuaga 


Annotation confidence Low
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Genome context
JH002734.1: 36660-36736 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from cgr-mir-23b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-23b-5p

Accession MIMAT0023864
Description Cricetulus griseus cgr-miR-23b-5p mature miRNA
Sequence 11 - GGGUUCCUGGCAUGCUGAUU - 30
Evidence experimental
Illumina [1]

Mature cgr-miR-23b-3p

Accession MIMAT0023865
Description Cricetulus griseus cgr-miR-23b-3p mature miRNA
Sequence 48 - AUCACAUUGCCAGGGAUUACC - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75