miRBase entry: cgr-mir-25

Stem-loop cgr-mir-25


Accession
MI0020470
Description
Cricetulus griseus cgr-mir-25 precursor miRNA
Gene family
MIPF0000013; mir-25


Sequence

126355 reads, 1753 reads per million, 6 experiments
cgggacuggccaguguugagAGGCGGAGACUUGGGCAAUUGCUggaagcugcccugggCAUUGCACUUGUCUCGGUCUGAcagugccggcccaacacug
.(((.(((((.(.((((...((((.(((((..(.(((((..((((........))))..))))).)..))))).)))))))).))))))))).......

Structure
------c   a     c g    gag    G     UU G     UG    aag 
       ggg cuggc a uguu   AGGC GAGAC  G GCAAU  CUgg   c
       ||| ||||| | ||||   |||| |||||  | |||||  ||||    
       ccc ggccg u acAG   UCUG CUCUG  C CGUUA  gguc   u
gucacaa   -     - g    ---    G     UU A     Cg    ccg 


Annotation confidence Not enough data
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Genome context
JH001296.1: 178664-178762 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from cgr-mir-25
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-25-5p

Accession MIMAT0023869
Description Cricetulus griseus cgr-miR-25-5p mature miRNA
Sequence 21 - AGGCGGAGACUUGGGCAAUUGCU - 43
Evidence experimental
Illumina [1]

Mature cgr-miR-25-3p

Accession MIMAT0023870
Description Cricetulus griseus cgr-miR-25-3p mature miRNA
Sequence 59 - CAUUGCACUUGUCUCGGUCUGA - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75