miRBase entry: cgr-mir-298

Stem-loop cgr-mir-298


Accession
MI0020477
Description
Cricetulus griseus cgr-mir-298 precursor miRNA
Gene family
MIPF0000206; mir-298


Sequence

9509 reads, 134 reads per million, 6 experiments
caggccuuuGGCAGAGGAGGGCUGUUCUUCccuuguguuuugugacuggGAGGAACUAGCCUUCUCUCUGCuuaggagugg
((..(((..(((((((((((((((((((((((..((........)).))))))))).))))))).))))))).)))..)).

Structure
-  gg   uu       -       -         uu  guu 
 ca  ccu  GGCAGAG GAGGGCU GUUCUUCcc  gu   u
 ||  |||  ||||||| ||||||| |||||||||  ||    
 gu  gga  uCGUCUC CUUCCGA CAAGGAGgg  ca   u
g  ga   -u       U       U         -u  gug 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
JH000054.1: 2908283-2908363 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cgr-mir-298
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-298-5p

Accession MIMAT0023881
Description Cricetulus griseus cgr-miR-298-5p mature miRNA
Sequence 10 - GGCAGAGGAGGGCUGUUCUUC - 30
Evidence experimental
Illumina [1]

Mature cgr-miR-298-3p

Accession MIMAT0023882
Description Cricetulus griseus cgr-miR-298-3p mature miRNA
Sequence 50 - GAGGAACUAGCCUUCUCUCUGC - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75