Stem-loop cgr-mir-29a

Accession

MI0020478

Description

Cricetulus griseus cgr-mir-29a precursor miRNA

Gene family

MIPF0000009; mir-29

Literature search

1 open access papers mention cgr-mir-29a
(1 sentences)

Sequence

325817 reads, 4512 reads per million, 6 experiments

uuagaggaugACUGAUUUCUUUUGGUGUUCAGAGucaauagaauuuucUAGCACCAUCUGAAAUCGGUUauaaugauu
.......((((((((((((...(((((((.((((...........)))))))))))...)))))))))))).......

Structure

uuagagg            UUU       C    ucaa 
       augACUGAUUUC   UGGUGUU AGAG    u
       ||||||||||||   ||||||| ||||    a
       uaUUGGCUAAAG   ACCACGA Ucuu    g
uuaguaa            UCU       -    uuaa 

Annotation confidence High

Genome context

JH005876.1: 8380-8457 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-29a

Mature cgr-miR-29a-5p

• Accession: MIMAT0023883
• Description: Cricetulus griseus cgr-miR-29a-5p mature miRNA
• Sequence: 11 - ACUGAUUUCUUUUGGUGUUCAGAG - 34
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-29a-3p

• Accession: MIMAT0023884
• Description: Cricetulus griseus cgr-miR-29a-3p mature miRNA
• Sequence: 49 - UAGCACCAUCUGAAAUCGGUU - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75