miRBase entry: cgr-mir-29c

Stem-loop cgr-mir-29c


Accession
MI0020480
Description
Cricetulus griseus cgr-mir-29c precursor miRNA
Gene family
MIPF0000009; mir-29


Sequence

5248 reads, 62 reads per million, 6 experiments
cacaggcugACCGAUUUCUCCUGGUGUUCAGAgucuguuuuugucUAGCACCAUUUGAAAUCGGUUaugauguagg
.(((...(((((((((((...(((((((.(((...........))))))))))...)))))))))))...)))...

Structure
--c   ggc           UCC       C   gucu 
   aca   ugACCGAUUUC   UGGUGUU AGA    g
   |||   |||||||||||   ||||||| |||    u
   ugu   aUUGGCUAAAG   ACCACGA Ucu    u
gga   agu           UUU       -   guuu 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
JH002029.1: 103082-103157 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cgr-mir-29c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-29c-5p

Accession MIMAT0023887
Description Cricetulus griseus cgr-miR-29c-5p mature miRNA
Sequence 10 - ACCGAUUUCUCCUGGUGUUCAGA - 32
Evidence experimental
Illumina [1]

Mature cgr-miR-29c-3p

Accession MIMAT0023888
Description Cricetulus griseus cgr-miR-29c-3p mature miRNA
Sequence 46 - UAGCACCAUUUGAAAUCGGUU - 66
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75