miRBase entry: cgr-mir-300

Stem-loop cgr-mir-300


Accession
MI0020481
Description
Cricetulus griseus cgr-mir-300 precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

6683 reads, 80 reads per million, 6 experiments
uaucguuugcuacuugaagagagguuauccuuuguguguuugcuuuacgcgaaaugaaUAUGCAAGGGCAAGCUCUCUUCgaggagcaaa
.....((((((.(((((((((((.((..((((((((((((((.(((....))).)))))))))))))).)).))))))))))).))))))

Structure
uaucg      a           g  au              c   a 
     uuugcu cuugaagagag uu  ccuuuguguguuug uuu c
     |||||| ||||||||||| ||  |||||||||||||| |||  
     aaacga gagCUUCUCUC AA  GGGAACGUAUaagu aag g
-----      g           G  -C              a   c 


Annotation confidence Not enough data
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Genome context
JH000884.1: 52952-53041 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cgr-mir-300
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-300

Accession MIMAT0023889
Description Cricetulus griseus cgr-miR-300 mature miRNA
Sequence 59 - UAUGCAAGGGCAAGCUCUCUUC - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75