miRBase entry: cgr-mir-30c-2

Stem-loop cgr-mir-30c-2


Accession
MI0020486
Description
Cricetulus griseus cgr-mir-30c-2 precursor miRNA
Gene family
MIPF0000005; mir-30

Literature search
1 open access papers mention cgr-mir-30c-2
(4 sentences)

Sequence

37284 reads, 511 reads per million, 6 experiments
ugacagauacUGUAAACAUCCUACACUCUCAGCugugaaaaguaagaaagcugggagaaggcuguuuacucucucugcc
...((((....(((((((.(((...(((((((((..............))))))))).))).)))))))....))))..

Structure
uga    uacU       U   ACA         gugaaa 
   caga    GUAAACA CCU   CUCUCAGCu      a
   ||||    ||||||| |||   |||||||||       
   gucu    cauuugu gga   gagggucga      g
-cc    cucu       c   --a         aagaau 


Annotation confidence Not enough data
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Genome context
JH000029.1: 3475422-3475500 [-]

Database links

Mature cgr-miR-30c

Accession MIMAT0023898
Description Cricetulus griseus cgr-miR-30c mature miRNA
Sequence 11 - UGUAAACAUCCUACACUCUCAGC - 33
Evidence experimental
Illumina [1]

Mature cgr-miR-30c-2

Accession MIMAT0037458
Description Cricetulus griseus cgr-miR-30c-2 mature miRNA
Sequence 11 - UGUAAACAUCCUACACUCUCAGC - 33
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75