miRBase entry: cgr-mir-30d

Stem-loop cgr-mir-30d


Accession
MI0020487
Description
Cricetulus griseus cgr-mir-30d precursor miRNA
Gene family
MIPF0000005; mir-30

Literature search
1 open access papers mention cgr-mir-30d
(4 sentences)

Sequence

973585 reads, 13467 reads per million, 6 experiments
ucucaggaagucugugucuguaaacauccccgacuggaagcuguaagccacuuccaagCUUUCAGUCAGAUGUUUGCUGCcaccggcucu
.....(((.(((.(((.(.(((((((((...((((((((((((.(((...))).).))))))))))).))))))))).).))).))))))

Structure
ucuca   a   u   u u         ccc           - u   c 
     gga guc gug c guaaacauc   gacuggaagcu g aag  
     ||| ||| ||| | |||||||||   ||||||||||| | ||| c
     ucu cgg cac G CGUUUGUAG   CUGACUUUCga c uuc  
-----   -   c   C U         --A           a c   a 


Annotation confidence Not enough data
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Genome context
JH050121.1: 453-542 [+]

Database links

Mature cgr-miR-30d

Accession MIMAT0023899
Description Cricetulus griseus cgr-miR-30d mature miRNA
Sequence 59 - CUUUCAGUCAGAUGUUUGCUGC - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75